Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12600229 chr16:89859649 C/T 0.000159 177 25.87 20.37 36.37 KM Plot
PCPG rs12600466 chr17:50306926 A/T 3.24E-5 178 26.57 27.2 14.43 KM Plot
PCPG rs12600551 chr17:65792997 C/T 0.000423 178 24.5 34.37 8.22 KM Plot
PCPG rs12600737 chr17:50311547 C/G 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs12601842 chr17:50271517 G/A 4.36E-5 174 25.53 29.7 14.43 KM Plot
PCPG rs12601870 chr17:50271674 G/A 4.36E-5 174 25.53 29.7 14.43 KM Plot
PCPG rs12601960 chr17:50289205 G/T 6.66E-5 177 25.77 27.95 14.47 KM Plot
PCPG rs12616820 chr2:241540110 A/G 4.53E-5 173 26.88 20.17 10.3 KM Plot
PCPG rs12618914 chr2:239070534 G/A 8.25E-5 170 29.43 18.2 13.22 KM Plot
PCPG rs12619455 chr2:239080149 A/C 2.67E-5 174 29.5 18.2 13.22 KM Plot
PCPG rs12619511 chr2:176139776 T/C 0.000139 175 25.28 28.47 6.62 KM Plot
PCPG rs12619657 chr2:241528011 G/A 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs12620571 chr2:241529079 G/A 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs12620622 chr2:241529215 G/A 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs12623230 chr2:239092893 C/T 3.1E-5 172 29.43 18.2 13.22 KM Plot